I'll present our approach to the activation of Rhodopsin using large scale molecular dynamics and NMR. We combine NMR experiments with over 5 microseconds of all-atom molecular dynamics simulation of rhodopsin to propose that an increase in internal hydration has a direct role in defining the MI state. Two distint protonation states of Glu-181 were investigated. The simulation shows the formation of a rhodopsin structure, consistent with MI, where water channels connect the intradiscal space to the cytoplasm through the ligand binding domain and conserved D(E)RY and NPxxY motifs. In support of the hydration topography predicted by simulation, we present NMR evidence showing increased magnetization transfer from water via rhodopsin to the hydrophobic core of the lipid matrix upon MI formation. Our results provide a basis for a direct role of internal water in rhodopsin's activation mechanism.
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Back to The Middle Atlantic Regional Meeting (May 16 - 18, 2007)