Friday, 18 May 2007 - 9:40 AM
107 (Pfahler Hall)
447

Probing the solution structure of the Alzheimer's peptides?

Angel E. Garcia, Nikolaos G. Sgourakis, Yilin Yan, Scott McCallum, and Chunyu Wang. Rensselaer Polytechnic Institute, Troy, NY

The role of two peptides, Aß40 and Aß42 in the early pathogenesis of the Alzheimer's disease (AD) is frequently emphasized in the literature. It is known that Aß42 is more prone to aggregation than Aß40, even though they only differ in two (I,A) amino acid residues at the C-terminal end. A direct comparison of the ensembles of conformations adopted by the monomers in solution has been limited by the inherent flexibility of the unfolded peptides. We characterize the conformations of Aß42 and Aß40 in water by using a combination of molecular dynamics (MD) and measured scalar 3J-coupling data. We perform replica exchange MD (REMD) simulations and find that various classical forcefields quantitatively reproduce the NMR data when the sampling is extended to the microseconds time scale. Using the quantitative agreement of the NMR data as a validation of the model, we proceed to compare the conformational ensembles of the Aß42 and Aß40 peptide monomers. Our analysis confirms the existence of structured regions within the otherwise flexible Aß peptides. We find that the C-terminus of Aß42 is more structured than that of Aß40. The formation of a ß-hairpin in the sequence 31IIGLMVGGVVIA involving short strands at residues 31-34 and 38-41 reduces the C-terminal flexibility of the Aß42 peptide and may be responsible for the higher propensity of this peptide to form amyloids.

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